## demo data
import scanpy as sc
nodes,edges=get_net_data(sc.datasets.pbmc68k_reduced())Data
For data management
get_net_data
get_net_data (adata, n:int=5)
*Get demo data from the latent space
Args: adata (type): Annot data of scanpy n (int, optional): rows to sample. Defaults to 5.
Returns: tuple: nodes, edges*
| Type | Default | Details | |
|---|---|---|---|
| adata | |||
| n | int | 5 | number of nodes per subset/group |
| Returns | tuple |
nodes.head(1)| cell id | bulk_labels | n_genes | percent_mito | n_counts | S_score | G2M_score | phase | louvain | x | y | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | CAGACAACAAAACG-7 | CD4+/CD25 T Reg | 1109 | 0.012702 | 3779.0 | -0.054589 | -1.267457 | G1 | 0 | -7.174749 | -6.994063 |
edges.head(1)| cell id1 | cell id2 | distance | |
|---|---|---|---|
| 0 | CAGACAACAAAACG-7 | GTGATGACTGGGAG-4 | 1.298669 |